Henderson is a city in Sibley County, Minnesota, United States. The population was 886 at the 2010 census.
According to the United States Census Bureau, the city has a total area of 1.0 square miles (2.7 km²), of which, 1.0 square miles (2.6 km²) of it is land and 0.04 square miles (0.1 km²) of it (1.94%) is water.
Minnesota State Highways 19 and 93 are two of the main routes in the community. U.S. Route 169 is nearby.