Winneconne is a village in Winnebago County, Wisconsin, United States. The population was 2,401 at the 2000 census. The village is located within the Town of Winneconne. The Wolf River runs through the village.
Winneconne is located at 44°6'39" North, 88°42'51" West (44.111029, -88.714311).
According to the United States Census Bureau, the village has a total area of 2.0 square miles (5.2 km²), of which, 1.6 square miles (4.1 km²) of it is land and 0.4 square miles (1.1 km²) of it is water. The total area is 20.40% water.